MetaDb: a database for metabolites and their regulation in plants with an emphasis on medicinal plants

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Tools
BLAST DNA or RNA Translate tool Donor Prediction HMMER InterProScan ITOL MEME
Non-coding RNA database
LncRNAwiki miRbase Rfam RNAcentral SILVA
Alkaloids Phenolics Terpenoids
SignalP5 Swiss-Model TMHMM
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MetaDb

Database and Tools

Data Source

MetaDb

MetaDb, a database for metabolites and regulation in medicinal plants that provides comprehensive information concerning the natural products, their biosynthetic pathways, enzyme genes and transcription factors. It is dedicated to facilitating future scientific research on medicinal plants by integrating valuable resources and tools.

Database and Tools

Predictions

MEME


HMMER


SWISS-MODEL


NCBI Batch CD-search


Genomics

Ensembl Plants


Gramene


HMOD


MPOD


Enrichments

GO


KEGG


WIKIPATHWAYS


Reactome


Analysis tools

BLAST


UniProt


PlantTFDB


ITOL


Chemical Drawing

ChemDoole 2D

Data Source

    Flavonoids are composed of two benzene rings (A ring and B ring) and three connected carbon atoms.
Phenolics
    Terpenoids are a class of hydrocarbon compounds composed of isoprene as the basic unit, with the general formula (C₅H₈)n.
Terpenoids
    Most alkaloids have a very complex circular structure, with nitrogen mostly contained within the ring and possessing properties similar to those of alkalis.
Alkaloids